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Metabolomic Eye 
Computational Molecular Phenotyping (CMP) of a mouse eye made with a glancing oblique section through the retina with taurine, glutamine and glutamate assigned to red, green and blue color channels respectively. In this image, the optic nerve head can be seen in the upper right portion of the image with the rectus muscles (red/gold) attaching to the sclera (green) on the upper left portion of the image and an oblique muscle in the lower left of the image. Concentric rings of retinal layers are then represented from the sclera through to the vascular choroid, the retinal pigment epithelium (light gold), photoreceptor outer segments (dark pink), photoreceptor inner segments (light pink), photoreceptor cell bodies, bipolar cells (shades of purple/pink), amacrine cells (varying shades of blue/light green/red), inner plexiform layer (fine filigree of purple, blue and green), ganglion cell layer (varying shades of blue/green), and the optic fiber layer (blue structures at center of image).

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Stunning scientific sights

/ 15 PHOTOS
Metabolomic Eye 
Computational Molecular Phenotyping (CMP) of a mouse eye made with a glancing oblique section through the retina with taurine, glutamine and glutamate assigned to red, green and blue color channels respectively. In this image, the optic nerve head can be seen in the upper right portion of the image with the rectus muscles (red/gold) attaching to the sclera (green) on the upper left portion of the image and an oblique muscle in the lower left of the image. Concentric rings of retinal layers are then represented from the sclera through to the vascular choroid, the retinal pigment epithelium (light gold), photoreceptor outer segments (dark pink), photoreceptor inner segments (light pink), photoreceptor cell bodies, bipolar cells (shades of purple/pink), amacrine cells (varying shades of blue/light green/red), inner plexiform layer (fine filigree of purple, blue and green), ganglion cell layer (varying shades of blue/green), and the optic fiber layer (blue structures at center of image).

Prize-winning eye

The International Science and Engineering Visualization Challenge honors artists and scientists who use visual media to promote understanding of scientific research. The annual competition is sponsored by the National Science Foundation and the journal Science. This picture, titled "Metabolomic Eye," is 2011's first-place winner in the photography category. It's a metabolic snapshot of the diversity of cells in a mouse eye retina, produced by neuroscientist Bryan William Jones of the University of Utah's Moran Eye Center using a technique called computational molecular phenotyping.

Microscopic image of trichomes on the skin of an immature cucumber 
The photograph is a microscopic image (magnification 800X) of the skin of an immature cucumber. Fruits and vegetables are most vulnerable to predators when they are immature. Cucumbers have developed two powerful mechanisms to protect themselves against most herbivores. The first is to grow closely arranged trichomes on their outer skin. The trichomesÕ sharp distal points are 40 times thinner than a sewing needle and can penetrate either the bodies or mouthparts of herbivores. The second relates to the lower, globular part of the trichome which contains toxic and bitter substances called cucurbiticins that repulse or kill invaders. Cucurbiticins are the most bitter substances known. Humans can detect the presence of cucurbiticins even when they are diluted to one part in a billion.

Hot as a cucumber

A colorful polarizing microscopic photograph of closely arranged trichomes on the outer skin of a cucumber was magnified 800 times by Robert Belliveau, a pathologist from Las Vegas. The image captures the sharp distal points of the trichomes, which are 40 times thinner than a sewing needle and perforate the mouthparts of herbivores. The globular base contains toxic, bitter cucurbiticins, the most bitter substances known, which can be detected by humans when diluted to one part in a billion. The image won honorable mention in the 2011 International Science and Engineering Visualization Challenge.

The Cliff of the Two-dimensional World 
When the layered ternary compound, Ti3AlC2, is placed in hydrofluoric acid, the Al layers are selectively etched away resulting in two dimensional (2-D) layers of Ti3C2 weakly bonded to each other. The image shows a number of these particles, where exfoliation is obvious. Like graphene, individual layers can be isolated and their properties explored. Since Ti3AlC2 is a member of a large family of layered solids called MAX phases that number over 60 and given the similarities with graphene, we are calling this new family of 2-D solids ÔMXene.Õ This image was chosen to represent a new frontier - that is only visible from the cliff - in the world of 2-D materials that will indubitably play an important role in the future.

Microscopic cliff

When titanium aluminum carbide is placed in hydrofluoric acid, layers of aluminum are selectively etched away, resulting in two-dimensional layers of carbide weakly bonded to each other. This image shows a number of these layers. Like graphene, the individual layers can be isolated and their properties explored. This new family of layered solids is called MXene. The "People's Choice" photograph was created by Babak Anasori, Michael Naguib, Yury Gogotsi and Michel W. Barsoum of Drexel University.

Tumor death-cell receptors on breast cancer cell 
This illustration shows tumor death-cell receptors (DR5) on breast cancer cell surfaces targeted by the monoclonal antibody TRA-8, which was developed at the University of Alabama, Birmingham School of Medicine. 
[Image courtesy of Emiko Paul and Quade Paul, Echo Medical Media; Ron Gamble, UAB Insight] 

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Battling a tumor

This illustration shows tumor death-cell receptors (DR5) on breast cancer cell surfaces targeted by the monoclonal antibody TRA-8, shown here in green. The anti-cancer technique was developed at the University of Alabama, Birmingham School of Medicine. Honorable mention, image courtesy of Emiko Paul and Quade Paul, Echo Medical Media; Ron Gamble, UAB Insight.

Variable-diameter carbon nanotubes 
This 3-D illustration shows the production of variable-diameter carbon nanotubes. University of Nebraska-Lincoln electrical engineering professor, Dr. Yongfeng Lu, discovered laser-based production techniques that can precisely control the length, diameter and properties of carbon nanotubes. Using these highly electrically and thermally conductive nanotubes, LuÕs team developed methods to improve transistors and sensors that may one day speed up computers and 
other electrical devices, while minimizing energy consumption and heat generation. They also discovered how to control a carbon nanotubeÕs diameter from one end to the other, which alters its characteristics. Lu envisions variable-diameter nanotubes customized for specific uses. This 3-D illustration was developed to help Dr. Lu's team to visualize these nano-scale discoveries for diverse audiences. 
[Image courtesy of Joel Brehm, University of Nebraska-Lincoln Office of Research and Economic Dev

Nanotubes on parade

This 3-D illustration shows the production of variable-diameter carbon nanotubes.Yongteng Lu, an electrical engineering professor at the University of Nebraska-Lincoln, discovered laser-based production techniques that can precisely control the length, diameter and properties of carbon nanotubes. The illustration was developed to help Lu's team visualize nanoscale discoveries for diverse audiences. Honorable mention, image courtesy of Joel Brehm, University of Nebraska-Lincoln Office of Research and Economic Development.

Exploring Complex Functions using Domain Coloring 
Complex functions are of fundamental importance in many areas of mathematics, physics and engineering. The picture shows the visualization of a complex function using a specifically designed color scheme. Following a technique called 'domain coloring,' the color scheme assigns a certain color to every complex number, inducing a coloring of the function domain according to its values at every point. The picture allows to easily explore properties of the function, for instance, critical values such as zeros (black spots) or singularities (white spots). Contour lines indicate how the function deforms the complex plane. This modern visualization technique gives unprecedented insight into complex functions. 
[Image courtesy of Konrad Polthier and Konstantin Poelke, Free University of Berlin]

Delightful domains

Complex functions are of fundamental importance in many areas of mathematics, physics and engineering. This illustration shows the visualization of a complex function using a specially designed color scheme. Following a technique called "domain coloring," the color scheme assigns a certain color to every complex number, inducing a coloring of the function domain according to its values at every point. Honorable mention, image courtesy of Konrad Polthier and Konstantin Poelke, Free University of Berlin.

Separation of a Cell 
This is a cell undergoing mitosis or 'cell division'. The cell membrane is shown in blue and the cell's chromosomes in yellow. Mitosis is a well studied and well imaged phenomenon in 2D images, but never before seen quite like this! What makes this image particularly special is the use of a special new fluorescent protein called MiniSOG (Shu et al., 2011), shown flying out of the cell. MiniSOG promises to do for electron microscopy what the famous 'green fluorescent protein' did for light microscopy, by allowing scientists to target certain structures then see these clearly under electron microscopes. Here MiniSOG has been tagged to another protein, H2B, to bind to DNA and this particular cell was caught in the process of mitosis. The data itself was reconstructed using the relatively new technique of 3D Serial Block-Face Scanning Electron Microscopy (SBFSEM), where the specimen is repeatedly cut then imaged and image then traced to produce the beautiful 3D image you see here.

Separation of a cell

This illustration shows a cell undergoing mitosis or "cell division." The cell membrane is shown in blue, and the cell's chromosomes are shown in yellow. Mitosis is a well-studied and well-imaged phenomenon in two-dimensional images, but it's never before been seen quite like this. What makes this image special is the use of a new fluorescent protein called MiniSOG, shown flying out of the cell. People's Choice, image courtesy of Andrew Noske and Thomas Deerinck (National Center for Microscopy and Imaging Research, University of California, San Diego); Horng Ou and Clodagh O'Shea (Salk Institute).

The Cosmic Web 
This poster shows different aspects of the Cosmic Web, from global to local dynamics, the underlying network of voids, the flows of matter in time, the structures seen in the density field and finally the galaxies we observe. The poster combines several techniques that highlight a particular aspect of the Cosmic web. The streams of matter are shown by high-pass filtering the velocity field and then using an advection process to move particles. The Void network was computed using an algorithm that extracts the topological features in the density field. The trails of matter were created by following particles in the simulation through its evolution in time. The density field was computed from the Delaunay tessellation of the particles and then sampled on a grid for volume rendering. The galaxies were assigned to halos according to their density. The seamless blending between sections was done taking advantage of the void network by using each void as a mask in the composition layers. 
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The cosmic web

This is just one piece of a poster showing different aspects of the cosmic web, the structure of voids and matter concentrations that make up our universe. The full poster shows the evolution of the cosmic web over billions of years. First-place, informational posters and graphics; image courtesy of Miguel Angel Aragon-Calvo (Johns Hopkins University), Julieta Aguilera and Mark SubbaRao (Adler Planetarium).

The Ebola Virus 
The Ebola Virus poster. View of the virion surface and of the ebola particle internal content. 
[Image courtesy of Ivan Konstantinov, Yury Stefanov, Alexander Kovalevsky, Anastasya Bakulina; Visual Science]

The Ebola virus

An eye-catching poster provides a three-dimensional, annotated view of the Ebola virus' supramolecular structure. Honorable mention, informational posters and graphics; image courtesy of Ivan Konstantinov, Yury Stefanov, Alexander Kovalevsky and Anastasya Bakulina of Visual Science.

Transmission Electron Microscopy: Structure, Function and 3D Reconstruction 
Visualization is an essential research component when trying to understand the complex pathogenesis of infectious diseases at the National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID), Integrated Research Facility (IRF) in Frederick, MD. For example, transmission electron microscopy (TEM) is the most effective method of determining the general morphology of a filovirus particle. 2D and 3D TEM data in conjunction with volumetric data from the Protein Data Bank (PDB) can further illuminate virus structure.

Electron microscopy

Visualization is an essential research component when trying to understand the complex pathogenesis of infectious diseases. This illustration is taken from a poster developed to show how transmission electron microscopy is used to study virus particles. People's Choice, informational posters and graphics; image courtesy of Fabian de Kok-Mercado, Victoria Wahl-Jensen and Laura Bollinger of the National Institute of Allergy and Infectious Diseases IRF.

Foldit

Foldit is a game designed to tackle the problem of protein folding. By learning more about the 3-D structure of proteins (or how they "fold"), scientists can better understand their function, and get a better idea how to combat diseases, create vaccines and even find novel biofuels. In Foldit, players are presented with a model of a protein, which they can fold by using a variety of provided tools. The game evaluates how well the player has folded the protein and gives them a score. Scores are uploaded to a leaderboard, allowing for competition between players from all around the world. First place, interactive games; screenshot courtesy of Seth Cooper, David Baker, Zoran Popović, Firas Khatib, Jeff Flatten, Kefan Xu, Dun-Yu Hsiao and Riley Adams, Center for Game Science at the University of Washington.

Velu the Welder 
Welding is a method used for binding metal or nonmetal structures. In this game an apprentice by name Velu gets basic training in the art of welding. The game is designed to expose one to basic skill sets aimed at getting acquainted with the craft of welding. Developed as a technology demonstrator for the National Skills Development of India, this game will be used to train millions of apprentices in a cost effective way. The objective of the game is to introduce the apprentice to two types of welding - gas and arc, and is designed to have five tasks. In the first two tasks he learns hand coordination and movement using gas welding. In the remaining sets he is exposed to arc welding to join four pieces of metals to build the frame. The game is best played using a Nintendo Wii Remote which mimics the actual welding gun. For competition purposes we appropriated it for the mouse. 
[Image courtesy of Muralitharan Vengadasalam, Ganesh Venkat, Vignesh Palanimuthu, Fabian Herrera and Ashok M

Velu the Welder

Welding is a method used for binding metal or nonmetal structures. In this game, an apprentice by the name of Velu gets basic training in the art of welding. The game is designed to help the player get acquainted with the craft of welding. Developed as a technology demonstrator for the National Skills Development of India, this game will be used to train millions of apprentices in a cost-effective way. People's Choice, interactive games; screenshot courtesy of Muralitharan Vengadasalam, Ganesh Venkat, Vignesh Palanimuthu, Fabian Herrera and Ashok Maharaja of Tata Consultancy Services.

Meta!Blast 3D Interactive Application for Cell and Metabolic Biology. Level 1: The Cell 
It is 2052. An unknown pathogen is decimating the EarthÕs vegetation and consequences are reverberating throughout our ecosystem. An accident has stranded a team of scientists inside a photosynthetic cell. You, the lab dishwasher they left behind, are their only hope. Can you navigate the bioship through microscopic hazards, solve metabolic puzzles, and re-engineer microorganisms to save the planet? An unseen world is waiting for you to explore and countless lives depend on your cleverness... Meta!Blast communicates concepts of biology/STEM to high school students. The game provides a 3D world that mimics a photosynthetic cell. A unique server-side database enables educators to create groups and questions according to student needs. Interactivity, educator input, and biological accuracy provide an application to engage high school students in science. In this release, you must pilot the cell and repair the biolog

Meta!Blast 3D

The year is 2052. An unknown pathogen is decimating Earth's vegetation. An accident has stranded a team of scientists inside a photosynthetic cell. You, the lab dishwasher they left behind, are their only hope. Can you navigate the bioship through microscopic hazards, solve metabolic puzzles, and re-engineer microorganisms to save the planet? Meta!Blast communicates biological concepts to high-school students. Honorable mention, interactive games; screenshot courtesy of W. Schneller, P.J. Campbell, M. Stenerson, D. Bassham, and E.S. Wurtele of Iowa State University.

Powers of Minus Ten 
Powers of Minus Ten (POMT) was originally conceived as an iPad app that would allow the user to zoom into the human body, exploring worlds at different levels of magnification (e.g. tissue, cellular, molecular, subatomic). In this version of POMT, the user is able to zoom into the human hand down to the molecular level. Three cell types and a variety of other structures can be viewed and explored. Users can also investigate structures in the ÔLabÕ area of the app, and review what they have discovered via timed mini-games. The app covers basic topics in biology such as the Phases of Mitosis and DNA Replication. POMT is available for iPads, iPhones, PCs, Macs, and as a web-based game. Future versions of POMT will allow the user to explore different subjects such as plants, minerals, water droplets, etc, as well as explore ÔdeeperÕ at the atomic and subatomic levels of magnification. 
[Image courtesy of Laura Lynn Gonzalez; Green-Eye Visualization] 
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Powers of Minus Ten

Powers of Minus Ten was originally conceived as an iPad app that would allow the user to zoom into the human body, exploring worlds at different levels of magnification. In this version of POMT, the user is able to zoom into the human hand down to the molecular level. Three cell types and a variety of other structures can be viewed and explored. POMT is available for iPads, iPhones, PCs, Macs and as a Web-based game. Honorable mention, interactive games; screenshot courtesy of Laura Lynn Gonzalez, Green-Eye Visualization.

Build-a-Body 
Put on your surgical gloves and get ready for the operating room! Well maybe not yet, but you can learn about the organs and organ systems of the human body with this drag and drop game. Choose organs from the organ tray and place them in their correct position within the body to create organ systems. Put on your surgical thinking cap and test your anatomy knowledge with our skill-testing case studies. Get to know human anatomy with Build-a-Body and keep your surgical gown clean. It's not the OR, so have fun! 
[Image courtesy Jeremy Friedberg (Game designer/producer), Nicole Husain (Content & Writing), Ian Wood (Programming), Genevieve Brydson (Project Management), Wensi Sheng (3D graphics, Compositing/post-production), Lorraine Trecroce (3D graphics, Project Management), Kariane St-Denis (French Translation), David Rowe (Post-production, programming, Testing), Ruby Pajares (UI Design), Arij Al Chawaf (Content & Writing), Shaun Rana (Graphics) and Nancy Reilly (Testing), Spongela

Build-a-Body

Put on your surgical gloves and get ready for the virtual operating room: You can learn about the organs of the human body with a drag-and-drop game called Build-a-Body. Choose organs from the organ tray and place them in their correct position within the body to create organ systems. Honorable mention, interactive games; screenshot courtesy of Jeremy Friedberg, Nicole Husain, Ian Wood, Genevieve Brydson, Wensi Sheng, Lorraine Trecroce, Kariane St-Denis, David Rowe, Ruby Pajares, Arij Al Chawaf, Shaun Rana and Nancy Reilly of Spongelab Interactive.

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