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Can the U.S. keep Covid variants in check? Here's what it takes.

Experts say the U.S. must change its public health response if it wants to outflank emerging coronavirus variants.
Image: Biden Administration Reinstates COVID Travel Ban For Non-US Residents
People ride a nearly empty AirTrain at John F. Kennedy Airport in New York on Monday.Spencer Platt / Getty Images

The Covid-19 variants that have emerged in the United Kingdom, Brazil, South Africa and now Southern California are eliciting two notably distinct responses from U.S. public health officials.

First, broad concern. A variant that wreaked havoc in the U.K., leading to a spike in case numbers and hospitalizations, is surfacing in more places in the U.S. This week, another worrisome variant seen in Brazil surfaced in Minnesota. If these or other strains significantly change the way the virus transmits and attacks the body, as scientists fear they might, they could cause yet another prolonged surge in illnesses and deaths in the U.S., even as case numbers have begun to plateau and vaccines are rolling out.

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On the other hand, variants aren't novel or even uncommon in viral illnesses. The viruses that trigger common colds and flus regularly evolve. Even if a mutated strain of SARS-CoV-2, the virus that causes Covid-19, makes it more contagious or makes people sicker, the basic public health response stays the same: monitor the virus and any mutations as they move across communities. Use masking, testing, physical distancing and quarantine to contain the spread.

The problem is that the U.S. has struggled with every step of its public health response in its first year of battle against Covid-19. And that raises the question of whether the country will devote the attention and resources needed to outflank the virus as it evolves.

Researchers are quick to stress that a coronavirus mutation in itself is no cause for alarm. As a function of evolutionary biology, small changes to a virus's genome happen all the time in the course of the virus's making millions and billions of copies as part of the infection process.

"The word 'variant' and the word 'mutation' have these scary connotations, and they aren't necessarily scary," said Kelly Wroblewski, director of infectious disease programs for the Association of Public Health Laboratories.

When a mutation rings public health alarms, it's typically because it has combined with other mutations and, collectively, changed how the virus behaves. At that point, it may be named a variant. A variant can make a virus spread faster or more easily jump between species. It can make a virus more successful at making people sicker or change how our immune systems respond.

SARS-CoV-2 has been mutating for as long as we've known about it; scientists identified mutations throughout 2020. Although they are relevant scientifically — mutations can actually be helpful, acting like a fingerprint that allows scientists to track a virus's spread — the identified strains mostly carried little concern for public health.

Westminster Bridge during snowfall in London on Sunday.Alberto Pezzali / AP

Then came the end of the year, when several variants began drawing scrutiny. One of the most concerning, first detected in the U.K., appears to make the virus more transmissible. Emerging evidence suggests that it also could be more deadly, although scientists are still debating that.

We know more about the U.K. variant than others not because it's necessarily worse, but because the British have one of the best virus surveillance programs in the world, said epidemiologist William Hanage, a professor at Harvard University.

By contrast, the U.S. has one of the weakest genomic surveillance programs of any rich country, Hanage said. "As it is, people like me cobble together partnerships with places and try and beg them" for samples, he said on a recent call with reporters.

Other variant strains were identified in South Africa and Brazil, and they share some mutations with the U.K. variant. That those changes evolved independently in several parts of the world suggests that they might present an evolutionary advantage for the virus. Yet another strain was recently identified in Southern California; it was flagged because of its increasing presence in hard-hit cities like Los Angeles.

The Southern California strain was detected because researchers at Cedars-Sinai, a hospital and research center in Los Angeles, have unfettered access to patient samples. They were able to see that the strain made up a growing share of cases at the hospital in recent weeks, as well as among the limited number of other samples haphazardly collected at a network of labs in the region.

Not only does the U.S. do less genomic sequencing than most other wealthy countries, but it also does its surveillance in a happenstance way. That means it takes longer to detect new strains and draw conclusions about them. It's not yet clear, for example, whether the Southern California strain was truly worthy of a press release.

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Vast swaths of America's privatized and decentralized system of health care aren't set up to send samples to public health or academic labs. "I'm more concerned about the systems to detect variants than I am these particular variants," said the director of Nevada's public health laboratory, Mark Pandori, an associate professor at the University of Nevada-Reno School of Medicine.

Limited genomic surveillance of viruses is yet another side effect of a fragmented and underfunded public health system that has struggled to test, track contacts and get Covid-19 under control throughout the pandemic, Wroblewski said.

The country's public health infrastructure, generally funded disease by disease, has decent systems set up to sequence flu, foodborne illnesses and tuberculosis, but there has been no national strategy for Covid-19. "To look for variants, it needs to be a national picture if it's going to be done well," Wroblewski said.

Last week, the Biden administration outlined a strategy for a national response to Covid-19, which included expanded surveillance for variants.

So far, vaccines for Covid-19 appear to protect against the known variants. Moderna has said its vaccine is effective against the U.K. and South African strains, although it yields fewer antibodies in the face of the latter. The company is working to develop a revised dose of the vaccine that could be added to the current two-shot regimen as a precaution.

Boxes containing the Moderna Covid-19 vaccine sit in a freezer at Seton Medical Center in Daly City, Calif., on Dec. 22.Yalonda M. James / The San Francisco Chronicle via Getty Images file

But a lot of damage can be done in the time it will take to roll out the current vaccine, let alone an update.

Even with limited sampling, the U.K. variant has been detected in more than two dozen states, and the Centers for Disease Control and Prevention has warned that it could be the predominant strain in the U.S. by March. When it took off in the U.K. at the end of last year, it caused a swell in cases, overwhelmed hospitals and led to a holiday lockdown. Whether the U.S. faces the same fate could depend on which strains it is competing against and how the public behaves in the weeks ahead.

Already risky interactions among people could, on average, get a little riskier. Many researchers are calling for better masks and better indoor ventilation. But any updates on recommendations would be likely to play at the margins. Even if variants spread more easily, the same recommendations public health experts have been espousing for months — masking, physical distancing and limiting time indoors with others — will be the best way to ward them off, said Dr. Kirsten Bibbins-Domingo, a physician and professor at the University of California, San Francisco.

"It's very unsexy what the solutions are," Bibbins-Domingo said. "But we need everyone to do them."

That doesn't make the task simple. Masking remains controversial in many states, and the public's patience for maintaining physical distance has worn thin.

Adding to the concerns: Even though case numbers have stabilized in many parts of the U.S. in recent weeks, they have stabilized at rates many times what they were during previous periods in the pandemic or in other parts of the world. Having all that virus in so many bodies creates more opportunities for new mutations and new variants to emerge.

"If we keep letting this thing sneak around, it's going to get around all the measures we take against it, and that's the worst possible thing," said Pandori of Nevada.

Compared with less virulent strains, a more contagious variant is likely to require that more people be vaccinated before a community can see the benefits of widespread immunity. It's a bleak outlook for a country already falling behind in the race to vaccinate enough people to bring the pandemic under control.

"When your best solution is to ask people to do the things that they don't like to do anyway, that's very scary," Bibbins-Domingo said.

KHN (Kaiser Health News) is a nonprofit news service covering health issues. It is an editorially independent program of KFF (Kaiser Family Foundation) that is not affiliated with Kaiser Permanente.

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